Hands-on Teaching with Jupyter Notebooks on nanoHUB
2022.09.06 Michael Reppert, Chemisty, Purdue University
This video is part of the Back to School Webinar Series on Teaching found at https://nanohub.org/groups/chem/live_...
Table of Contents available below.
Dr. Reppert will discuss his use of nanoHUB Jupyter Notebook-based content in college Chemistry courses, focusing on nanoHUB's unique possibilities for hands-on simulation, visualization, and programming projects. As examples, he will describe three specific applications of nanoHUB content to courses at Purdue:
• A stand-alone Lattice Protein simulation and visualization app used to illustrate statistical mechanics and protein-folding concepts in CHM 372 (Physical Chemistry for life science students): https://nanohub.org/tools/latticeprotein
• A nanoHUB-hosted home page for a Physical Chemistry laboratory (CHM 37301), which students use both to access lab instructions, to learn basic Python programming, and to process and visualize their experimental data: https://nanohub.org/tools/chm37301
• A nanoHUB-hosted home page for a graduate Molecular Spectroscopy course, that guides students through advanced molecular and electrodynamics simulations as a means to visualize spectroscopic processes and learn the Python programming skills necessary to run molecular simulations and process spectroscopic data: https://nanohub.org/tools/molspec/
• The Protein Structure Lab tool (Amide I Vibrational Spectroscopy Lab) can be found at: https://nanohub.org/tools/amidespec
He will close with a few tips for educators interested in getting started with nanoHUB-hosted content in their courses.
Table of Contents:
00:00 Hands-on Teaching with Jupyter Notebooks in nanoHUB
01:18 How did I get started using nanoHUB?
02:58 How did I get started using nanoHUB?
06:32 Outline for today
07:20 Background & Definitions
07:28 What is a Jupyter Notebook?
09:34 What is nanoHUB?
12:58 Why Notebooks on nanoHUB?
14:50 Applications
15:03 CHM 372: Lattice Protein Simulator
20:07 CHM 370: Physical Chemistry Lab Analysis Visualization
24:00 CHM 676: Graduate Molecular Spectroscopy
28:31 Science Outreach: Protein Structure Lab
32:10 Getting Started
32:25 The Jupyter Notebook Tool
34:49 Getting Started: Anatomy of a nanoHUB App
37:59 Getting Started: Using GitHub
41:50 Advanced: Front-end/Back-end Projects
45:18 A word of caution: Data Storage
47:49 Conclusions
49:54 Thanks to…
This resource and related downloads can be found at: https://nanohub.org/resources/36471
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