BioPython Tutorial for Bioinformatics | Calculate GC Content of a sequence in a single fasta file

Опубликовано: 07 Май 2021
на канале: Bioinformatics Coach

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This tutorial shows you how to read a fasta file and calculate the GC content of sequences using the python bioinformatics package, biopython.

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Materials
________________________________________________________________________________________________

How to read fasta files using python
   • Read FASTA files with Python for Bioi...
   • Read FASTA files with Python for Bioi...

Video on how to install python libraries
   • Install python packages using pip
   • Installing python packages using pip ...

Video on how to install Anaconda in Linux
   • Install , Configure and Run Anaconda ...

Manual calculation of GC Content
   • Bioinformatics for beginners | Course...

Video on string indexing
   • Python for Bioinformatics #4: Extract...

Chapters
00:34 Download Data
02:10 Set file path
02:36 Import biopython library
03:16 Read fasta file
03:38 Extract sequence and begin analysis

Commands used

from Bio import SeqIO
SeqIO.parse
Bio.SeqUtils
GC

#Bioinformatics #DataScience #python

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