E340/542 Network Dynamics, Letcure 11, Parameter Fitting, November 12, 2024
ENG340/542 Biological Network Modeling, Lecture 11, Parameter Fitting
November 14, 2024
Presented by Prof. James A. Glazier
Indiana University, Department of Intelligent Systems Engineering and Biocomplexity Institute
Bloomington, IN 47408, USA
Engineering 340/542 teaches how to model network dynamics using the Tellurium/Antimony model specification framework and Python-based Jupyter notebooks. The course covers the basics of developing simple metabolic, cell-signaling, gene-regulatory and pharmaco-kinetic network models and fitting models to experimental data.
Contents
00:00 - Introduction
Slides available at: https://drive.google.com/drive/folder...
Exercises available at: https://drive.google.com/drive/folder...
Demos available at: https://drive.google.com/drive/folder...
For an on-line introduction to the Antimony/Tellurium modeling framework, please see:
https://tellurium.readthedocs.io/en/l...
To download Tellurium visit: https://tellurium.analogmachine.org/
If you found this video useful, please check out our other videos teaching computational modeling:
For dynamic network modeling: • E340/542 Introduction to Network Mode...
For multicellular agent-based modeling: • E443/543 Multicell Modeling Spring 2023
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