BioPython Tutorial for Bioinformatics | Calculate GC content of sequences in a multi-fasta file
This tutorial shows you how to read a fasta file and calculate the GC content of sequences using the python bioinformatics package, biopython.
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Materials
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Download codes and dataset using this link
https://github.com/vappiah/Python-Bio...
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Chapters
00:11 Introduction
00:35 Download Data
01:27 Import libraries
02:21 Set file path
03:05 Read fasta file
04:09 Extract and analyze sequences
08:52 Analyze sequences and save result to pandas dataframe
12:58 Create Dataframe using pandas
15:00 Save dataframe to output file
Commands used
from Bio import SeqIO
SeqIO.parse
Bio.SeqUtils
GC
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