Reading sequence from fasta file & estimating DNA Composition & GC content : flags, for loop, SPYDER
In this lecture, I discuss the challenges of reading a sequence from a fasta file and calculating the DNA composition and GC content
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What do you learn here -
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#Introduction to Spyder Integrated Development Environment for Python
#Openng a file in read mode to read the sequence
#FASTA format
#Opening a file in write mode to write the results
#Use of flags
#Reading a file line by line
#removing a character from line using rstrip
#string concatenation
#writing results to file
#simple logic to avoid the first line of a file
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#sequence #dna #fasta #GC #dna_omposition #ATGC #Proten #spyder #python3
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